Temperature measurement is very tricky.
The theory itself is simple. The junction of two different types of metals produces a small amount of voltage which is directly related to temperature. Measure the voltage, multiply by a constant, and you know the temperature.
The problem is the signal is only a few mille-volts, and the relationship is non linear, so a particular constant is usually only good for a 30F range at best. Also, the temperature at the input module can effect your readings.
Typically a special �thermocouple� module is used, which takes care of all of the calibration within a range of -30F to 1200F.
I'm not sure if you input module will work for this or not.
The manufacturer has a forum for the product, you may have better luck asking there:
http://www.appdigsupport.com/cgi-bin/ultimatebb.cgi?ubb=forum;f=7